[
    {
        "id": "demultiplexing_astrid_cruaud",
        "name": "demultiplexing_astrid_cruaud",
        "description": "",
        "version": "",
        "website": null,
        "git": "",
        "documentation": "",
        "article": "10.1111\/1755-0998.13006",
        "multiqc": "custom",
        "commands": [
            {
                "name": "demultiplexing_astrid_cruaud",
                "cname": "Demultiplexing Astrid Cruaud",
                "command": "",
                "category": "other",
                "output_dir": "demultiplexing_astrid_cruaud",
                "inputs": [
                    {
                        "name": "reads",
                        "type": "reads"
                    }
                ],
                "outputs": [
                    {
                        "name": "demultiplexed",
                        "type": "reads",
                        "file": "{sample}_fq",
                        "description": "The demultiplexed reads."
                    }
                ],
                "options": [
                    {
                        "name": "demultiplexing_astrid_cruaud_threads",
                        "prefix": "",
                        "type": "numeric",
                        "value": 4,
                        "min": 1,
                        "max": 32,
                        "step": 1,
                        "label": "Threads to use"
                    },
                    {
                        "name": "demultiplexing_astrid_cruaud_barcodes",
                        "type": "input_file",
                        "value": "",
                        "label": "Barcode file"
                    }
                ]
            }
        ],
        "install": {
            "parallel": [
                "apt-get install -y parallel"
            ]
        },
        "citations": {
            "parallel": [
                "Tange, O. (2015, March 22). GNU Parallel 20150322 ('Hellwig'). ;login: The USENIX Magazine. Zenodo. http:\/\/doi.org\/10.5281\/zenodo.16303"
            ]
        },
        "yaml": "{\n  id: demultiplexing_astrid_cruaud,\n  name: demultiplexing_astrid_cruaud,\n  description: \"\",\n  version: \"\",\n  website: ,\n  git: \"\",\n  documentation: \"\",\n  article: 10.1111\/1755-0998.13006,\n  multiqc: \"custom\",\n  commands:\n    [\n      {\n        name: demultiplexing_astrid_cruaud,\n        cname: \"Demultiplexing Astrid Cruaud\",\n        command: \"\",\n        category: \"other\",\n        output_dir: demultiplexing_astrid_cruaud,\n        inputs: [{ name: reads, type: \"reads\" }],\n        outputs: [\n          { name: demultiplexed, type: \"reads\", file: \"{sample}_fq\", description: \"The demultiplexed reads.\" }\n        ],\n        options:\n          [\n            {\n              name: \"demultiplexing_astrid_cruaud_threads\",\n              prefix: \"\",\n              type: \"numeric\",\n              value: 4,\n              min: 1,\n              max: 32,\n              step: 1,\n              label: \"Threads to use\",\n            },\n            {\n              name: demultiplexing_astrid_cruaud_barcodes,\n              type: input_file,\n              value: \"\",\n              label: \"Barcode file\",\n            },\n          ],\n      },\n    ],\n  install: {\n    parallel: [\n      \"apt-get install -y parallel\"\n    ] \n  },\n  citations:  {\n    parallel: [\n      \"Tange, O. (2015, March 22). GNU Parallel 20150322 ('Hellwig'). ;login: The USENIX Magazine. Zenodo. http:\/\/doi.org\/10.5281\/zenodo.16303\"\n    ]\n  }\n}\n"
    }
]