[
    {
        "id": "fasta2phylip",
        "name": "fasta to phylip",
        "article": "",
        "website": "",
        "git": "",
        "description": "Conversion of an aligned fasta file to phylip format",
        "version": "",
        "documentation": "",
        "multiqc": "custom",
        "commands": [
            {
                "name": "fasta2phylip",
                "command": "",
                "category": "format_conversion",
                "output_dir": "fasta2phylip",
                "inputs": [
                    {
                        "name": "fasta",
                        "type": "aligned_fasta",
                        "description": "aligned fasta file",
                        "from": "parameter"
                    }
                ],
                "outputs": [
                    {
                        "name": "phylip",
                        "type": "phylip",
                        "file": "*.phylip",
                        "description": "phylip file"
                    }
                ],
                "options": [
                    {
                        "name": "fasta2phylip_fasta",
                        "type": "input_file",
                        "value": "",
                        "label": "Path to aligned fasta file"
                    }
                ]
            }
        ],
        "script": "fasta2phylip.script.py",
        "install": [],
        "citations": [],
        "yaml": "{\n  id: fasta2phylip,\n  name: fasta to phylip,\n  article: \"\",\n  website: \"\",\n  git: \"\",\n  description: \"Conversion of an aligned fasta file to phylip format\",\n  version: \"\",\n  documentation: \"\",\n  multiqc: \"custom\",\n  commands:\n    [\n      {\n        name: fasta2phylip,\n        command: \"\",\n        category: \"format_conversion\",\n        output_dir: fasta2phylip,\n        inputs: [{ name: fasta, type: \"aligned_fasta\", description: \"aligned fasta file\", from: \"parameter\" }],\n        outputs: [{ name: phylip, type: \"phylip\", file: \"*.phylip\", description: \"phylip file\" }],\n        options: [\n          {\n            name: fasta2phylip_fasta,\n            type: input_file,\n            value: \"\",\n            label: \"Path to aligned fasta file\",\n          },\n        ],\n      },\n    ],\n  script: \"fasta2phylip.script.py\",\n  install:\n    {\n      # biopython: [\n      #   \"pip3 install biopython==1.76\"\n      # ]\n    },\n  citations:\n    {},\n}\n"
    }
]