[
    {
        "id": "snom",
        "name": "snom",
        "article": "",
        "website": "",
        "git": "https:\/\/gitlab.mbb.univ-montp2.fr\/ibonnici\/snom",
        "description": "Find out homologous of specific base of a query sequence in blast results",
        "version": "0.1.0",
        "documentation": "",
        "multiqc": "custom",
        "commands": [
            {
                "name": "snom",
                "cname": "snom",
                "command": "",
                "category": "other",
                "output_dir": "snom",
                "inputs": [
                    {
                        "name": "blast_out_snom",
                        "type": "tsv",
                        "description": "TSV with seqid, qstart qend btop, qseq, sseq informations",
                        "from": "parameter"
                    }
                ],
                "outputs": [
                    {
                        "name": "sfs_outgroup",
                        "type": "sfs",
                        "file": "outgroup.sfs.count",
                        "description": "specific nucleotide count as est-sfs outgroup format"
                    }
                ],
                "options": []
            }
        ],
        "install": [],
        "assets": [
            "snom"
        ],
        "citations": {
            "snom": [
                "Bonnici I. https:\/\/gitlab.mbb.univ-montp2.fr\/ibonnici\/snom"
            ]
        },
        "yaml": "{\n  id: snom,\n  name: snom,\n  article: \"\",\n  website: \"\",\n  git: \"https:\/\/gitlab.mbb.univ-montp2.fr\/ibonnici\/snom\",\n  description: \"Find out homologous of specific base of a query sequence in blast results\",\n  version: \"0.1.0\",\n  documentation: \"\",\n  multiqc:  \"custom\", # from mbb_mqc_plugin\n  commands:\n    [\n      {\n        name: \"snom\",\n        cname: \"snom\",\n        command: \"\",\n        category: \"other\",\n        output_dir: \"snom\",\n        inputs: \n        [\n          { name: blast_out_snom, type: \"tsv\", description: \"TSV with seqid, qstart qend btop, qseq, sseq informations\", from: \"parameter\" }, \n        ],\n        outputs:\n        [\n          { name: sfs_outgroup, type: \"sfs\", file: \"outgroup.sfs.count\", description: \"specific nucleotide count as est-sfs outgroup format\" }\n        ],\n        options:\n          [\n          ],\n      },\n    ],\n  install: {\n    # blast: [\n    #   \"cd \/opt\/biotools\/\",\n    #   \"wget -O ncbi-blast-2.12.0+.tar.gz https:\/\/ftp.ncbi.nlm.nih.gov\/blast\/executables\/blast+\/2.12.0\/ncbi-blast-2.12.0+-x64-linux.tar.gz\",\n    #   \"tar -xvzf ncbi-blast-2.12.0+.tar.gz\",\n    #   \"ENV PATH $PATH:\/opt\/biotools\/ncbi-blast-2.12.0+\/bin\"\n    # ],\n    # mbb_mqc_plugin:\n    # [\n    #   \"cd \/opt\/biotools\",\n    #   \"git clone https:\/\/gitlab.mbb.univ-montp2.fr\/mmassaviol\/mbb_mqc_plugin.git\",\n    #   \"cd mbb_mqc_plugin\",\n    #   \"python3 setup.py install\"\n    # ]\n  },\n  assets:  [\"snom\"],\n  citations:  {\n    snom: [\n      \"Bonnici I. https:\/\/gitlab.mbb.univ-montp2.fr\/ibonnici\/snom\"\n    ]\n  }\n}\n"
    }
]