[
    {
        "name": "microbial_metagenome",
        "docker_name": "microbial_metagenome",
        "description": "",
        "version": "0.0.1",
        "author": "MBB",
        "input": "raw_reads",
        "steps": [
            {
                "title": "quality",
                "name": "quality",
                "tools": [
                    "trimmomatic"
                ],
                "default": "trimmomatic"
            },
            {
                "title": "assembly",
                "name": "assembly",
                "tools": [
                    "megahit"
                ],
                "default": "megahit"
            },
            {
                "title": "metagenomic",
                "name": "metagenomic",
                "tools": [
                    "abricate"
                ],
                "default": "abricate"
            },
            {
                "title": "metagenomic_2",
                "name": "metagenomic_2",
                "tools": [
                    "metabat"
                ],
                "default": "metabat"
            },
            {
                "title": "Assembly Quality",
                "name": "assembly_quality",
                "tools": [
                    "quast"
                ],
                "default": "quast"
            }
        ],
        "options": [
            {
                "name": "results_dir",
                "type": "output_dir",
                "value": "\/Results",
                "label": "Results directory: ",
                "volumes": [
                    {
                        "Results": "\/Results"
                    }
                ]
            }
        ],
        "steps_in": [],
        "params_equals": [],
        "git": "https:\/\/gitlab.mbb.univ-montp2.fr\/khalid\/microbial_metagenome",
        "json": "",
        "yaml": "{\n    name: \"microbial_metagenome\",\n    docker_name: \"microbial_metagenome\",\n    description: \"\",\n    version: \"0.0.1\",\n    author: \"MBB\",\n    input: \"raw_reads\",\n    steps: [\n        { title: \"quality\", name: \"quality\", tools: [trimmomatic], default: \"trimmomatic\" },\n        { title: \"assembly\", name: \"assembly\", tools: [megahit], default: \"megahit\" },\n        { title: \"metagenomic\", name: \"metagenomic\", tools: [abricate], default: \"abricate\" },\n        { title: \"metagenomic_2\", name: \"metagenomic_2\", tools: [metabat], default: \"metabat\" },\n        { title: \"Assembly Quality\", name: \"assembly_quality\", tools: [quast], default: \"quast\" },\n    ],\n    options: [\n        {\n            name: \"results_dir\",\n            type: \"output_dir\",\n            value: \"\/Results\",\n            label: \"Results directory: \",\n            volumes:  [Results: \"\/Results\"]\n        },\n    ],\n    steps_in: [],\n    params_equals: [\n\n    ]\n}"
    }
]