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Name	DockerName	Author	Label	Description	Version	Git	JSON version
BWT2-Pic-MarkDup-GatkRealign-BCFmpileup	bwt2-pic-markdup-gatkrealign-bcfmpileup	MBB	MBBstable	SNP calling	0.0.1	git	v	import json API
Capture_UCE	capture_uce	MBB	MBBstable		0.0.1	git	v	import json API
Dada2	Dada2	MBB	MBBstable	Metabarcoding with dada2	0.0.1	git	v	import json API
Frogs	Frogs	MBB	MBBstable	16 metabarcoding analysis with Frogs	0.0.1	git	v	import json API
Genome_Profile	genomeprofiler	MBB	MBBstable	Infer the global properties of a genome from unassembled sequenced data	0.0.1	git		API
Interop_report	Interop_report	MBB	MBBstable	Generate a workflow report from Illumina output	0.0.1	git	v	import json API
JAMP	JAMP	MBB	MBBstable		0.0.1	git	v	import json API
Long_Read_Assembly	longreadsassembly	MBB	MBBstable		0.0.1	git	v	import json API
Megahit-FindMitos-Blast-Annotate-IGV	megahit-findmitos-blast-annotate-igv	MBB	MBBstable	Find mitochondrial genome	0.0.1	git	v	import json API
Metabarcoding	metabarcodingdada2	MBB	MBBstable		0.0.1	git		API
MitoZ	mitoz	MBB	MBBstable		0.0.1	git		API
Mito_Assembler_Megahit	mitoassemblermegahit	MBB	MBBstable		0.0.1	git	v	import json API
Orientator_Benjamin	Orientator_Benjamin	MBB	MBBstable	Thanks to outgroups, this pipeline determine and write the Ancestral Allele of biallelic variant in a VCF	0.0.1	git	v	import json API
Orientator_Khalid	Orientator_Khalid	MBB	MBBstable	Thanks to outgroups, this pipeline determine and write the Ancestral Allele of biallelic variant in a VCF	0.0.1	git	v	import json API
RADseq_denovo	RADseq_denovo	MBB	MBBstable	Stacks pipeline denovo mode	0.0.1	git	v	import json API
RADseq_ref	RADseq_ref	MBB	MBBstable	Stacks RADseq on ref. genome	0.0.1	git	v	import json API
RNAseq	rnaseqde	MBB	MBBstable	Differential expression from RNAseq counts	0.0.1	git		API
RNAseq_denovo	rnaseqdenovo	MBB	MBBstable		0.0.1	git		API
RnaSeq-Fatsp-Hisat2-Htseq-Deseq.json	rnaseq-fatsp-hisat2-htseq-deseq.json	MBB	MBBstable	Rnaseq differential expression	0.0.1	git	v	import json API
RnaSeqDemo	RnaSeqDemo	MBB	MBBstable	RnaSeq DE Demo	0.0.1	git	v	import json API
Simul_Gpop	simul_gpop	MBB	MBBstable		0.0.2	git		API
Tlex3	tlex3_workflow	MBB	MBBstable		0.0.1	git		API
Variant_calling	variantcalling	MBB	MBBstable		0.0.1	git		API
Variant_calling_benchmark	variantcallingbenchmark	MBB	MBBstable		0.0.1			API
Variant_calling_benchmark_From_bam	variantcalling_benchmark_frombam	MBB	MBBstable		0.0.1			API
Virus_Assembler_Megahit	virusassemblermegahit	MBB	MBBstable		0.0.1	git		API
Vsearch	vsearch	MBB	MBBstable	Get OTU from metabarcoding reads with Vsearch	0.0.1	git	v	import json API
microbial_metagenome	microbial_metagenome	MBB	MBBstable		0.0.1	git		API

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Workflows

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Workflow yaml